Authors :
Siddharth Singh
Volume/Issue :
Volume 11 - 2026, Issue 6 - June
Google Scholar :
https://tinyurl.com/yfyf66ee
Scribd :
https://tinyurl.com/3kz9nsb7
DOI :
https://doi.org/10.38124/ijisrt/26jun1484
Note : A published paper may take 4-5 working days from the publication date to appear in PlumX Metrics, Semantic Scholar, and ResearchGate.
Abstract :
Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumannii, Pseudomonas
aeruginosa, and Enterobacter spp. (collectively the ESKAPE pathogens) cause the majority of healthcare-associated
infections worldwide and are the cause of most multidrug-resistant (MDR) bacterial deaths. Phage-antibiotic combination
therapy takes advantage of phage-antibiotic synergy (PAS), a mechanistically interesting concept, to overcome drug
resistance in such organisms. Methods and objectives: Here we describe the molecular mechanisms that constitute PAS,
which include exploitation of efflux pumps, cell filamentation using the SOS response, alteration of the bacterial outer
membrane to improve permeability, dissolution of biofilms, and selection of bacteriophage-resistant mutants which are
paradoxically again sensitive to antibiotics due to associated fitness cost trade-offs. Data for PAS with ESKAPE pathogens,
as determined in checkerboard assays, time kill experiments or in vivo model studies, will be presented and discussed in
view of standard laboratory approaches and the few clinical case series reported. PAS represents a convergent therapeutic
principle in which the actions of phages and antibiotics are synergistic by acting in an interdependent way on bacteria.
However, the lack of a harmonized methodology to determine the PAS effect, immature regulations and an insufficient
database on the clinical application of phage-antibiotic combinations, particularly with respect to rational and optimal
sequencing and dosing in practice, still hamper its clinical development. The European Pharmacopoeia's agreement on
standard quality methods for bacteriophages for medicinal use in the coming year, and the EMA Guideline on Phage therapy
(expected 2025), show considerable progress in reducing regulatory barriers, but key data are still needed to establish PAS
as a reliable and robust therapy.
Keywords :
Phage-Antibiotic Synergy, ESKAPE Pathogens, Bacteriophage Therapy, Antimicrobial Resistance, Efflux Pump, Biofilm, SOS Response, Clinical Translation, Regulatory Framework.
References :
- Rice LB. Federal funding for the study of antimicrobial resistance in nosocomial pathogens: No ESKAPE. The Journal of Infectious Diseases. 2008;197(8):1079–1081. https://doi.org/10.1086/533452
- De Oliveira DMP, Forde BM, Kidd TJ, et al. Antimicrobial resistance in ESKAPE pathogens. Clinical Microbiology Reviews. 2020;33(3):e00181-19. https://doi.org/10.1128/CMR.00181-19
- Santajit S, Indrawattana N. Mechanisms of antimicrobial resistance in ESKAPE pathogens. BioMed Research International. 2016;2016:2475067. https://doi.org/10.1155/2016/2475067
- Breidenstein EBM, de la Fuente-Núñez C, Hancock REW. Pseudomonas aeruginosa: all roads lead to resistance. Trends in Microbiology. 2011;19(8):419–426. https://doi.org/10.1016/j.tim.2011.04.005
- Munita JM, Arias CA. Mechanisms of antibiotic resistance. Microbiology Spectrum. 2016;4(2). https://doi.org/10.1128/microbiolspec.VMBF-0016-2015
- Donlan RM, Costerton JW. Biofilms: survival mechanisms of clinically relevant microorganisms. Clinical Microbiology Reviews. 2002;15(2):167–193. https://doi.org/10.1128/CMR.15.2.167-193.2002
- Murray CJL, Ikuta KS, Sharara F, et al. Global burden of bacterial antimicrobial resistance in 2019: a systematic analysis. The Lancet. 2022;399(10325):629–655. https://doi.org/10.1016/S0140-6736(21)02724-0
- World Health Organization. Global priority list of antibiotic-resistant bacteria to guide research, discovery, and development of new antibiotics. 2017. WHO Global Priority Pathogens List
- Lin DM, Koskella B, Lin HC. Phage therapy: an alternative to antibiotics in the age of multi-drug resistance. World Journal of Gastrointestinal Pharmacology and Therapeutics. 2017;8(3):162–173. https://doi.org/10.4292/wjgpt.v8.i3.162
- Kortright KE, Chan BK, Koff JL, Turner PE. Phage therapy: a renewed approach to combat antibiotic-resistant bacteria. Cell Host & Microbe. 2019;25(2):219–232. https://doi.org/10.1016/j.chom.2019.01.014
- Tagliaferri TL, Jansen M, Horz HP. Fighting pathogenic bacteria on two fronts: phages and antibiotics as combined strategy. Frontiers in Cellular and Infection Microbiology. 2019;9:22. https://doi.org/10.3389/fcimb.2019.00022
- Comeau AM, Tétart F, Trojet SN, Prère MF, Krisch HM. Phage-antibiotic synergy (PAS): β-lactam and quinolone antibiotics stimulate virulent phage growth. PLoS ONE. 2007;2(8):e799. https://doi.org/10.1371/journal.pone.0000799
- Torres-Barceló C, Hochberg ME. Evolutionary rationale for phages as complements of antibiotics. Trends in Microbiology. 2016;24(4):249–256. https://doi.org/10.1016/j.tim.2015.12.011
- Santajit S, Indrawattana N. Mechanisms of antimicrobial resistance in ESKAPE pathogens. BioMed Research International. 2016;2016:2475067. https://doi.org/10.1155/2016/2475067
- Arias CA, Murray BE. The rise of the Enterococcus: beyond vancomycin resistance. Nature Reviews Microbiology. 2012;10:266–278. https://doi.org/10.1038/nrmicro2761
- Hunashal Y, Kumar GS, Choy MS, et al. Molecular basis of β-lactam antibiotic resistance mediated by Enterococcus faecium PBP5. Nature Communications. 2023;14:4268. https://doi.org/10.1038/s41467-023-39966-5
- Peacock SJ, Paterson GK. Mechanisms of methicillin resistance in Staphylococcus aureus. Annual Review of Biochemistry. 2015;84:577–601. https://doi.org/10.1146/annurev-biochem-060614-034516
- Howden BP, Davies JK, Johnson PDR, Stinear TP, Grayson ML. Reduced vancomycin susceptibility in Staphylococcus aureus, including VISA and hVISA. Clinical Microbiology Reviews. 2010;23:99–139. https://doi.org/10.1128/CMR.00042-09
- Wyres KL, Holt KE. Klebsiella pneumoniae as a key trafficker of drug-resistance genes. Nature Reviews Microbiology. 2018;17:157–168. https://doi.org/10.1038/s41579-018-0124-8
- Carbapenem-resistant Klebsiella pneumoniae bloodstream infections and emergence of NDM/OXA-48 co-producing strains. Journal of Clinical Medicine. 2025;14:6932. https://doi.org/10.3390/jcm14196932
- Evans BA, Amyes SGB. OXA β-lactamases. Clinical Microbiology Reviews. 2014;27:241–263. https://doi.org/10.1128/CMR.00117-13
- Harding CM, Hennon SW, Feldman MF. Uncovering the mechanisms of Acinetobacter baumannii virulence. Nature Reviews Microbiology. 2018;16:91–102. https://doi.org/10.1038/nrmicro.2017.148
- Pang Z, Raudonis R, Glick BR, Lin TJ, Cheng Z. Antibiotic resistance in Pseudomonas aeruginosa: mechanisms and alternative therapeutic strategies. Biotechnology Advances. 2019;37:177–192. https://doi.org/10.1016/j.biotechadv.2018.11.013
- European Centre for Disease Prevention and Control (ECDC). Antimicrobial resistance surveillance in Europe. https://www.ecdc.europa.eu
- Jacoby GA. AmpC β-lactamases. Clinical Microbiology Reviews. 2009;22:161–182. https://doi.org/10.1128/CMR.00036-08
- Tagliaferri TL, Jansen M, Horz HP. Fighting pathogenic bacteria on two fronts: phage therapy and antibiotics as combined strategy. Front Cell Infect Microbiol. 2019;9:22. https://doi.org/10.3389/fcimb.2019.00022
- Bertozzi Silva J, Storms Z, Sauvageau D. Host receptors for bacteriophage adsorption. FEMS Microbiol Lett. 2016;363:fnw002. https://doi.org/10.1093/femsle/fnw002
- Chan BK, Sistrom M, Wertz JE, Kortright KE, Narayan D, Turner PE. Phage selection restores antibiotic sensitivity in MDR bacteria. Sci Rep. 2016;6:26717. https://doi.org/10.1038/srep26717
- Gordillo Altamirano FL, Barr JJ. Phage therapy in the postantibiotic era. Clin Microbiol Rev. 2019;32:e00066-18. https://doi.org/10.1128/CMR.00066-18
- Tarasenko OI, et al. Phage–antibiotic synergy and resistance mechanism targeting. mBio. 2025. https://journals.asm.org/journal/mbio
- D'Ari R. The bacterial SOS response. BioEssays. 1985;2:9–12. https://doi.org/10.1002/bies.950020104
- Bulssico R, et al. Antibiotic-induced filamentation promotes phage infection and phage–antibiotic synergy. PLoS Pathog. 2023. https://doi.org/10.1371/journal.ppat.1011671
- Baharoglu Z, Mazel D. SOS response and antibiotic resistance. Microbiol Spectr. 2014;2(5). https://doi.org/10.1128/microbiolspec.MDNA3-0009-2014
- Lin DM, Koskella B, Lin HC. Phage therapy: an alternative to antibiotics. World J Gastroenterol. 2017;23(1):151–164. https://doi.org/10.3748/wjg.v23.i1.151
- Górski A, Międzybrodzki R, Weber-Dąbrowska B, et al. Phage therapy: current status and perspectives. Med Res Rev. 2020;40(1):459–463. https://doi.org/10.1002/med.21610
- Kortright KE, Chan BK, Turner PE. Phage therapy: a renewed approach against antibiotic resistance. Cell Host Microbe. 2019;25(2):219–232. https://doi.org/10.1016/j.chom.2019.01.014
- Flemming HC, Wingender J, Szewzyk U, et al. Biofilms: an emergent form of bacterial life. Nat Rev Microbiol. 2016;14:563–575. https://doi.org/10.1038/nrmicro.2016.94
- Drulis-Kawa Z, Majkowska-Skrobek G, Maciejewska B. Bacteriophages and phage-derived proteins—application approaches. Viruses. 2015;7(2):936–963. https://doi.org/10.3390/v7020936
- De Soir S, Parée H, Kamarudin NHN, Wagemans J, Lavigne R, Braem A, et al. Exploiting phage–antibiotic synergies to disrupt Pseudomonas aeruginosa PAO1 biofilms in the context of orthopedic infections. Microbiol Spectr. 2024;12(1):e03219-23. https://doi.org/10.1128/spectrum.03219-23
- Kunz Coyne AJ, et al. Phage–antibiotic combinations against MRSA biofilms. Microbiol Spectr. 2024. https://journals.asm.org/journal/spectrum
- Liu CG, Green SI, Min L, et al. Phage–antibiotic synergy is driven by a unique combination of antibacterial mechanism of action and stoichiometry. mBio. 2020;11(4):e01462-20. https://doi.org/10.1128/mBio.01462-20
- Kortright KE, Chan BK, Koff JL, Turner PE. Phage therapy and antibiotic combinations: timing and evolutionary considerations. Curr Opin Biotechnol. 2022;68:282–289. https://doi.org/10.1016/j.copbio.2021.11.003
- De Soir S, Parée H, Kamarudin NHN, Wagemans J, Lavigne R, Braem A, et al. Exploiting phage–antibiotic synergies to disrupt Pseudomonas aeruginosa PAO1 biofilms in the context of orthopedic infections. Microbiol Spectr. 2024;12(1):e03219-23. https://doi.org/10.1128/spectrum.03219-23
- Chan BK, Sistrom M, Wertz JE, Kortright KE, Narayan D, Turner PE. Phage selection restores antibiotic sensitivity in MDR bacteria. Sci Rep. 2016;6:26717. https://doi.org/10.1038/srep26717
- Gordillo Altamirano FL, Barr JJ. Phage therapy in the postantibiotic era. Clin Microbiol Rev. 2019;32(2):e00066-18. https://doi.org/10.1128/CMR.00066-18
- Zhao M, Li H, Gan D, Wang M, Deng H, Yang QE. Antibacterial effect of phage cocktails and phage–antibiotic synergy against pathogenic Klebsiella pneumoniae. mSystems. 2024;9:e00607-24. https://journals.asm.org/journal/msystems
- Latka A, Drulis-Kawa Z. Advantages and limitations of bacteriophages and phage-derived depolymerases in Klebsiella pneumoniae infections. Viruses. 2020;12(7):737. https://doi.org/10.3390/v12070737
- Kortright KE, Chan BK, Koff JL, Turner PE. Phage therapy: a renewed approach to combat antibiotic-resistant bacteria. Cell Host Microbe. 2019;25(2):219–232. https://doi.org/10.1016/j.chom.2019.01.014
- Gordillo Altamirano FL, Kostoulias X, Subedi D, Korneev D, Peleg AY, Barr JJ. Phage-resistant Acinetobacter baumannii are resensitized to antimicrobials. Nat Microbiol. 2021;6:157–161. https://doi.org/10.1038/s41564-020-00830-7
- Wang X, Loh B, Gordillo Altamirano FL, Yu Y, Hua X, Leptihn S. Phage–antibiotic synergy in multidrug-resistant Acinetobacter baumannii. Emerg Microbes Infect. 2021;10(1):990–1002. https://doi.org/10.1080/22221751.2021.1920925
- Lin DM, Koskella B, Lin HC. Phage therapy: an alternative to antibiotics in the age of multidrug resistance. World J Gastroenterol. 2017;23(1):151–164. https://doi.org/10.3748/wjg.v23.i1.151
- Kunz Coyne AJ, Stamper KC, El Ghali A, et al. Synergistic bactericidal effects of phage-enhanced antibiotic therapy against MRSA biofilms. Microbiol Spectr. 2024. https://journals.asm.org/journal/spectrum
- Drilling AJ, Ooi ML, Miljkovic D, et al. Long-term safety and efficacy of bacteriophage therapy in chronic staphylococcal infections. Front Cell Infect Microbiol. 2017;7:49. https://doi.org/10.3389/fcimb.2017.00049
- Abedon ST. Phage therapy of biofilms. Adv Appl Microbiol. 2015;89:1–79. https://doi.org/10.1016/bs.aambs.2014.09.003
- Kunz Coyne AJ, El Ghali A, Stamper KC, et al. Phage cocktail therapy restores daptomycin activity against multidrug-resistant Enterococcus faecium in a simulated endocardial vegetation model. Microbiol Spectr. 2023;11:e00340-23. https://doi.org/10.1128/spectrum.00340-23
- Uyttebroek S, Chen B, Onsea J, et al. Bacteriophage therapy for difficult-to-treat enterococcal infections: current evidence and future perspectives. Viruses. 2022;14(2):236. https://doi.org/10.3390/v14020236
- Nikolic I, Vukovic D, Gavric D, Cvetanovic J, Aleksic Sabo V, Gostimirovic S, Narancic J, Knezevic P. An Optimized Checkerboard Method for Phage–Antibiotic Synergy Detection. Viruses. 2022;14(7):1542. https://doi.org/10.3390/v14071542
- Gordillo Altamirano FL, Barr JJ. Phage Therapy in the Postantibiotic Era. Clinical Microbiology Reviews. 2019;32(2):e00066-18. https://doi.org/10.1128/CMR.00066-18
- European Pharmacopoeia Commission. Draft General Chapter 2.7.38: Bacteriophage potency determination. European Pharmacopoeia Forum. 2025. https://www.edqm.eu/en/european-pharmacopoeia
- Kortright KE, Chan BK, Turner PE. Phage Therapy: A Renewed Approach to Combat Antibiotic-Resistant Bacteria. Cell Host & Microbe. 2019;25(2):219–232. https://doi.org/10.1016/j.chom.2019.01.014
- Pirnay JP, Verbeken G, Ceyssens PJ, et al. Personalized bacteriophage therapy outcomes: a multicentre retrospective analysis of compassionate-use cases. Nature Microbiology. 2024. https://www.nature.com/nmicrobiol/
- Dedrick RM, Guerrero-Bosagna C, Garlena RA, et al. Engineered and personalized bacteriophage therapy for multidrug-resistant bacterial infections. Cell Host & Microbe. 2023. https://www.cell.com/cell-host-microbe/home
- (PASA16 clinical case series). Clinical application of personalized bacteriophage therapy against severe Pseudomonas aeruginosa infections. 2023. https://pubmed.ncbi.nlm.nih.gov/
- Jault P, Leclerc T, Jennes S, et al. Efficacy and tolerability of a cocktail of bacteriophages to treat burn wounds infected by Pseudomonas aeruginosa (PhagoBurn): a randomised, controlled, double-blind phase 1/2 trial. The Lancet Infectious Diseases. 2019;19(1):35–45. https://doi.org/10.1016/S1473-3099(18)30482-1
- Labrie SJ, Samson JE, Moineau S. Bacteriophage resistance mechanisms. Nature Reviews Microbiology. 2010;8:317–327. https://doi.org/10.1038/nrmicro2315
- Abedon ST. Ecology of anti-biofilm agents II: bacteriophage exploitation and biofilm resistance. Bacteriophage. 2015;5(4):e1098801. https://doi.org/10.1080/21597081.2015.1098801
- Kortright KE, Chan BK, Turner PE. Phage therapy: a renewed approach to combat antibiotic-resistant bacteria. Cell Host & Microbe. 2019;25(2):219–232. https://doi.org/10.1016/j.chom.2019.01.014
- Van Belleghem JD, Dabrowska K, Vaneechoutte M, Barr JJ, Bollyky PL. Interactions between bacteriophage, bacteria, and the mammalian immune system. Viruses. 2018;11(1):10. https://doi.org/10.3390/v11010010
- Roach DR, Debarbieux L. Phage therapy: awakening a sleeping giant. Emerging Topics in Life Sciences. 2017;1(1):93–103. https://doi.org/10.1042/ETLS20170012
- Pirnay JP, Verbeken G, Rose T, et al. Introducing yesterday’s phage therapy in today’s medicine. Future Microbiology. 2012;7(3):379–390. https://doi.org/10.2217/fmb.11.156
- European Medicines Agency (EMA). Guideline on quality aspects of phage therapy medicinal products. 2025. https://www.ema.europa.eu/
- European Pharmacopoeia Commission. General chapter 2.7.38: Bacteriophage potency determination. 2025. https://www.edqm.eu/
- Maffei E, Mazzotta M, et al. Standardization challenges in phage susceptibility testing and phage therapy implementation. Frontiers in Microbiology. 2024. https://www.frontiersin.org/journals/microbiology
- Daubie V, Delbrassinne L, et al. Phage susceptibility testing: challenges and perspectives for clinical implementation. Frontiers in Cellular and Infection Microbiology. 2024. https://www.frontiersin.org/journals/cellular-and-infection-microbiology
- Strathdee SA, Hatfull GF, Mutalik VK, Schooley RT. Phage therapy: From biologic mechanisms to future directions. Cell. 2023;186(1):17–31. doi:10.1016/j.cell.2022.11.017. https://doi.org/10.1016/j.cell.2022.11.017
- Doud MB, Robertson JM, Strathdee SA. Optimizing phage therapy with artificial intelligence: a perspective. Front Cell Infect Microbiol. 2025;15:1611857. doi:10.3389/fcimb.2025.1611857. https://doi.org/10.3389/fcimb.2025.1611857
- Brown R, Lengeling A, Wang B. Phage engineering: how advances in molecular biology and synthetic biology are being utilized to enhance the therapeutic potential of bacteriophages. Quant Biol. 2017;5(1):42–54. doi:10.1007/s40484-017-0094-5. https://doi.org/10.1007/s40484-017-0094-5
- Zhou Z, Fu H, Li M, Han Z, Wu Z, Fan H, et al. Bacteriophage therapy: current strategies and future perspectives. MedComm. 2026;7(3):e70645. doi:10.1002/mco2.70645. https://doi.org/10.1002/mco2.70645
- Chae D. Phage-host-immune system dynamics in bacteriophage therapy: basic principles and mathematical models. Transl Clin Pharmacol. 2023;31(4):167–190. doi:10.12793/tcp.2023.31.e17. https://doi.org/10.12793/tcp.2023.31.e17
- Supina BSI, Dennis JJ. The current landscape of phage–antibiotic synergistic (PAS) interactions. Antibiotics. 2025;14(6):545. doi:10.3390/antibiotics14060545. https://doi.org/10.3390/antibiotics14060545
- de Souza Silva J, et al. Pharmacokinetics and pharmacodynamics of bacteriophage therapy: a scoping review. Int J Antimicrob Agents. 2026;67(3):107705. https://doi.org/10.1016/j.ijantimicag.2025.107705
Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumannii, Pseudomonas
aeruginosa, and Enterobacter spp. (collectively the ESKAPE pathogens) cause the majority of healthcare-associated
infections worldwide and are the cause of most multidrug-resistant (MDR) bacterial deaths. Phage-antibiotic combination
therapy takes advantage of phage-antibiotic synergy (PAS), a mechanistically interesting concept, to overcome drug
resistance in such organisms. Methods and objectives: Here we describe the molecular mechanisms that constitute PAS,
which include exploitation of efflux pumps, cell filamentation using the SOS response, alteration of the bacterial outer
membrane to improve permeability, dissolution of biofilms, and selection of bacteriophage-resistant mutants which are
paradoxically again sensitive to antibiotics due to associated fitness cost trade-offs. Data for PAS with ESKAPE pathogens,
as determined in checkerboard assays, time kill experiments or in vivo model studies, will be presented and discussed in
view of standard laboratory approaches and the few clinical case series reported. PAS represents a convergent therapeutic
principle in which the actions of phages and antibiotics are synergistic by acting in an interdependent way on bacteria.
However, the lack of a harmonized methodology to determine the PAS effect, immature regulations and an insufficient
database on the clinical application of phage-antibiotic combinations, particularly with respect to rational and optimal
sequencing and dosing in practice, still hamper its clinical development. The European Pharmacopoeia's agreement on
standard quality methods for bacteriophages for medicinal use in the coming year, and the EMA Guideline on Phage therapy
(expected 2025), show considerable progress in reducing regulatory barriers, but key data are still needed to establish PAS
as a reliable and robust therapy.
Keywords :
Phage-Antibiotic Synergy, ESKAPE Pathogens, Bacteriophage Therapy, Antimicrobial Resistance, Efflux Pump, Biofilm, SOS Response, Clinical Translation, Regulatory Framework.