Authors :
Nishant Thalwal
Volume/Issue :
Volume 9 - 2024, Issue 7 - July
Google Scholar :
https://tinyurl.com/4utwaxh9
Scribd :
https://tinyurl.com/2y8jkfjp
DOI :
https://doi.org/10.38124/ijisrt/IJISRT24JUL1686
Note : A published paper may take 4-5 working days from the publication date to appear in PlumX Metrics, Semantic Scholar, and ResearchGate.
Abstract :
This study aims to investigate the microbial
diversity present in soil samples collected from various
dumping sites, which are known for their complex and
heterogeneous waste environments. The primary
objective is to isolate and characterize the microbial
communities inhabiting these soils, providing insights
into their composition and potential ecological roles.
Soil samples were collected by digging 5 cm deep at
multiple dumping locations to ensure a representative
sampling of the microbial populations. The collected soil
samples underwent a serial dilution process, extending
up to 10^-9 and 10^-10 dilutions, to facilitate the
isolation of individual microbial colonies. These diluted
samples were then inoculated onto Standard Potato
Dextrose Agar (PDA) media, a nutrient-rich medium
conducive to microbial growth. Following an incubation
period, distinct bacterial colonies were observed and
isolated for further analysis.
DNA was extracted from the isolated bacterial
colonies using a standard DNA extraction protocol. The
quality and purity of the extracted DNA were assessed
through gel electrophoresis, a technique that separates
DNA fragments based on their size. Remarkably, the
electrophoretic analysis revealed clear and distinct
DNA bands along with RNA bands, indicating successful
extraction of high-quality microbial DNA. Notably,
this was achieved without the use of proteinase
treatment, which is typically employed to remove protein
contaminants from DNA samples.
The results of this study underscore the robustness
of the methodologies employed in isolating and
characterizing microbial DNA from soil samples
collected at dumping sites. The presence of distinct
DNA and RNA bands highlights the effectiveness of the
DNA extraction process, even in the absence of
proteinase treatment. These findings provide valuable
insights into the microbial diversity within dumping site
soils, suggesting a rich and varied microbial community
that may play significant roles in soil health and waste
decomposition.
References :
- Fierer, N., & Jackson, R. B. (2006). "The diversity and biogeography of soil bacterial communities." Proceedings of the National Academy of Sciences, 103(3), 626-631. DOI: 10.1073/pnas.0507535103
- Liu, H., Carvalhais, L. C., Crawford, M., Singh, E., Dennis, P. G., Pieterse, C. M. J., & Schenk, P. M. (2017). "Inner plant values: Diversity, colonization and benefits from endophytic bacteria." Frontiers in Microbiology, 8, 2552. DOI: 10.3389/fmicb.2017.02552
- Wilson, K. (2001). "Preparation of genomic DNA from bacteria." Current Protocols in Molecular Biology, 56(1), 2.4.1-2.4.5. DOI: 10.1002/0471142727.mb0204s56
- Zhou, J., Bruns, M. A., & Tiedje, J. M. (1996). "DNA recovery from soils of diverse composition." Applied and Environmental Microbiology, 62(2), 316-322. DOI: 10.1128/aem.62.2.316-322.1996
- Pankhurst, C. E., Doube, B. M., Gupta, V. V. S. R., & Grace, P. R. (1997). "Soil biodiversity, bioindicators and soil health." Biodiversity and Sustainability of Soil Organisms, 15, 273-286. DOI: 10.1016/B978-0-444-82145-6.50024-4
- Schmidt, S. K., & Lipson, D. A. (2004). "Microbial growth under the snow: Implications for nutrient and allelochemical availability in temperate soils." Plant and Soil, 259(1-2), 1-7. DOI: 10.1023/ B.0000020931.62445.f3
- Strong, P. J., & Burgess, J. E. (2008). "Treatment methods for wine-related and distillery-related wastewaters: A review." Bioremediation Journal, 12(2), 70-87. DOI: 10.1080/10889860802006836
This study aims to investigate the microbial
diversity present in soil samples collected from various
dumping sites, which are known for their complex and
heterogeneous waste environments. The primary
objective is to isolate and characterize the microbial
communities inhabiting these soils, providing insights
into their composition and potential ecological roles.
Soil samples were collected by digging 5 cm deep at
multiple dumping locations to ensure a representative
sampling of the microbial populations. The collected soil
samples underwent a serial dilution process, extending
up to 10^-9 and 10^-10 dilutions, to facilitate the
isolation of individual microbial colonies. These diluted
samples were then inoculated onto Standard Potato
Dextrose Agar (PDA) media, a nutrient-rich medium
conducive to microbial growth. Following an incubation
period, distinct bacterial colonies were observed and
isolated for further analysis.
DNA was extracted from the isolated bacterial
colonies using a standard DNA extraction protocol. The
quality and purity of the extracted DNA were assessed
through gel electrophoresis, a technique that separates
DNA fragments based on their size. Remarkably, the
electrophoretic analysis revealed clear and distinct
DNA bands along with RNA bands, indicating successful
extraction of high-quality microbial DNA. Notably,
this was achieved without the use of proteinase
treatment, which is typically employed to remove protein
contaminants from DNA samples.
The results of this study underscore the robustness
of the methodologies employed in isolating and
characterizing microbial DNA from soil samples
collected at dumping sites. The presence of distinct
DNA and RNA bands highlights the effectiveness of the
DNA extraction process, even in the absence of
proteinase treatment. These findings provide valuable
insights into the microbial diversity within dumping site
soils, suggesting a rich and varied microbial community
that may play significant roles in soil health and waste
decomposition.