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Molecular Characterization, In-vitro and In-silico Studies of Garcinia kola Ethanol Stem Bark Extract Against Gastrointestinal Pathogens: E. coli, Salmonella typhimurium and Shigella dysenteria


Authors : Gladys O. Anyanwu; Joseph C. Uwaezuoke; Kenneth A. Yongabi; Chinyere N. Ohalete; Pauline O. Nnagbo; Maximus C. Korie

Volume/Issue : Volume 11 - 2026, Issue 4 - April


Google Scholar : https://tinyurl.com/mwjm36y6

Scribd : https://tinyurl.com/2zx88m62

DOI : https://doi.org/10.38124/ijisrt/26apr280

Note : A published paper may take 4-5 working days from the publication date to appear in PlumX Metrics, Semantic Scholar, and ResearchGate.


Abstract : Gastrointestinal infections caused by multidrug-resistant bacteria such as Escherichia coli, Salmonella typhimurium, and Shigella dysenteriae represent a growing public health challenge, highlighting the need for alternative therapeutic agents. This study aimed to evaluate the phytochemical composition, antibacterial potential, and in-silico binding interactions of Garcinia kola ethanol stem bark extract against these pathogens. The objectives were to identify key bioactive compounds, determine antibacterial efficacy, and assess molecular interactions with target bacterial proteins. Phytochemical screening was performed, and thin-layer chromatography was used to profile the chemical constituents. Bacterial isolates were characterized using cultural, biochemical, and 16S rRNA molecular methods. Antibacterial activity was assessed via zone of inhibition, minimum inhibitory concentration (MIC), and minimum bactericidal concentration (MBC) assays, while molecular docking studies evaluated binding affinities of extract compounds against bacterial protein targets. Results revealed the presence of saponins, anthraquinones, phlobatannins, tannins, cardiac glycosides, and phenols, with multiple compounds detected via TLC. The extract exhibited antibacterial activity with inhibition zones of 19.00 ± 1.00 mm to 35.00 ± 0.00 mm at 500 mg/ml, MIC values of 0.07 ± 0.01 to 0.45 ± 0.05 mg/ml, and MBC of 250–500 mg/ml. Molecular docking indicated strong binding of hesperidin, rutin, and ellagic acid (-5.7 to -9.7 kcal/mol) to bacterial proteins. In conclusion, Garcinia kola ethanol stem bark extract exhibits potent antibacterial activity and promising in-silico interactions, supporting its potential as a natural therapeutic agent. It is recommended that further in-vivo studies and formulation development be undertaken to explore clinical applications.

Keywords : Garcinia kola, Ethanol Extract, Gastrointestinal Pathogens, Antibacterial Activity, Phytochemicals, Molecular Docking

References :

  1. Abdullah, A., & Hassoni, M. (2024). Bacterial DNA extraction and purification techniques: Principles and applications. Journal of Molecular Microbiology, 15(2), 45–58.
  2. Abhadionmhen, A. O., Anyiam, V. I., Imarenezor, E. P. K., & Amiegbebhor, P. (2023). Antimicrobial effects of aqueous extract of Garcinia kola nuts on Salmonella isolates. South Asian Journal of Research in Microbiology, 16(2), 1–7.
  3. Abubakar, A., Usman, T., & Musa, S. (2020). Isolation and characterization of gastrointestinal bacterial pathogens from clinical specimens. African Journal of Microbial Research, 14(3), 110–122.
  4. Adebayo, E. A., Oyeleke, S. B., & Olorunmola, F. O. (2023). Thin layer chromatographic profiling and antimicrobial potential of selected medicinal plant extracts. Journal of Applied Sciences and Environmental Management, 27(1), 115–123.
  5. Adewumi, A. O., Oladipo, I. C., & Adejumo, S. A. (2023). Antibiotic resistance patterns of enteric bacteria isolated from clinical samples in Nigeria. African Journal of Clinical and Experimental Microbiology, 24(2), 85–94.
  6. Ajiboye, T., Adekunle, O., & Balogun, F. (2020). Ethanolic extraction and bioactivity analysis of medicinal plant materials. Nigerian Journal of Pharmaceutical Sciences, 19(1), 22–35.
  7. Alsalamah, S. A. (2022). Phytochemical and antibacterial activity of Garcinia kola extracts. International Journal of Biotechnology and Microbiology, 4(2), 24–28.
  8. Atlas, R. M., Bartha, R., & Kent, D. (1995). Microbial ecology: Fundamentals and applications. Redwood City: Benjamin/Cummings.
  9. Bale, J., Obinna, K., & Adeyemi, S. (2021). Morphological and biochemical identification of pathogenic bacteria from clinical samples. Journal of Clinical Microbiology, 12(4), 67–78.
  10. Bello, M. O., Ibrahim, A. O., & Ahmed, R. N. (2022). Comparative molecular docking analysis of plant-derived flavonoids and conventional antibiotics against bacterial targets. Journal of Molecular Graphics and Modelling, 114, 108189.
  11. Bukar, A., Saidu, Y., & Hassan, S. (2019). Phytochemical screening and antimicrobial evaluation of selected medicinal plants. International Journal of Herbal Medicine, 7(2), 15–24.
  12. Cheesbrough, M. (2010). District laboratory practice in tropical countries, Part 2. Cambridge: Cambridge University Press.
  13. Chukwu, M. N., Okeke, C. U., & Nwankwo, I. U. (2023). Antibacterial activity, minimum inhibitory concentration, and phytochemical analysis of selected medicinal plants. BMC Complementary Medicine and Therapies, 23, 145.
  14. Dallakyan, S., & Olson, A. J. (2015). Small-molecule library screening by docking with PyRx. Methods in Molecular Biology, 1263, 243–250.
  15. Dogara, A. M., Hamad, S. W., Hama, H. A., Bradosty, S. W., Kayfi, S., Al-Rawi, S. S., & Lema, A. A. (2022). Biological evaluation of Garcinia kola Heckel. BioMed Research International, 2022, 3837965.
  16. Eze, E. A., Okafor, P. N., & Ugwu, O. P. (2024). Evaluation of fluoroquinolone efficacy against multidrug-resistant gastrointestinal pathogens. Infectious Diseases Reports, 16(1), 34–42.
  17. Ezeigbo, I., Nwosu, C., & Okeke, O. (2016). Phytochemical extraction and antimicrobial evaluation of Nigerian medicinal plants. African Journal of Biotechnology, 15(12), 440–451.
  18. Gotep, J., Nwankwo, E., & Ladan, M. (2009). Standardization and culture of bacterial isolates from clinical specimens. Nigerian Journal of Microbiology, 23(1), 33–41.
  19. Ibrahim, H. A., & Abdullahi, M. (2024). Phytochemical variability of different parts of Garcinia kola and their antimicrobial implications. Journal of Herbal Medicine, 38, 100635.
  20. Klim, S., Patel, R., & Huang, Y. (2023). Computational preparation of ligands for molecular docking studies. Journal of Cheminformatics, 15(1), 102–115.
  21. Lam, K. J., & Clelland, R. (2024). PCR and sequencing techniques for bacterial identification. Molecular Genetics Today, 18(3), 77–90.
  22. Lawal, M., & Ojo, P. (2022). Thin-layer chromatography and retention factor analysis in phytochemistry. Journal of Chemical Analysis, 11(2), 55–65.
  23. Mensah, K. B., Asante, D. B., & Osei-Safo, D. (2024). In silico evaluation of flavonoids as inhibitors of bacterial enzymes: Implications for antimicrobial drug discovery. Computational Biology and Chemistry, 105, 107892.
  24. Mordi, J. (2020). Ethnobotanical identification and authentication of Garcinia kola in Imo State, Nigeria. Nigerian Journal of Plant Science, 29(1), 12–20.
  25. Nwankwo, C. C., Ezeanya, C. C., & Okoli, C. O. (2022). Molecular identification and characterization of enteric pathogens using 16S rRNA sequencing. Heliyon, 8(11), e11345.
  26. Oduro, I., Mensah, B., & Anning, A. (2020). Application of thin-layer chromatography in plant extract analysis. International Journal of Pharmacognosy, 12(3), 101–110.
  27. Ojo, O. A., Ojo, A. B., & Ajiboye, B. O. (2022). Phenolic compounds as antibacterial agents: Mechanisms of action and therapeutic potential. Journal of Food Biochemistry, 46(9), e14215.
  28. Okoronkwo, N. J. (2022). Phytochemistry and evaluation of antimicrobial activity of Garcinia kola on Escherichia coli. MOUAU Repository.
  29. Okoye, T. C., & Eze, C. S. (2023). Advances in GC-MS characterization of medicinal plants for antimicrobial drug discovery. Journal of Natural Products Research, 37(5), 1120–1135.
  30. Olalekan, A. J., Adeyemi, O. S., & Akinola, O. B. (2022). Antimicrobial activity of Garcinia kola extracts against selected pathogenic microorganisms. Journal of King Saud University – Science, 34(3), 101978.
  31. Peter, J., Uwineza, T., & Mutabazi, C. (2022). Antibacterial activity of plant extracts against gastrointestinal pathogens. East African Journal of Biological Research, 9(2), 89–102.
  32. Rufa’i, F. A., Baecker, D., & Mukhtar, M. D. (2023). Phytochemical screening and GC-MS analysis of Garcinia kola extract. Antibiotics, 12(4), 713.
  33. Trott, O., & Olson, A. J. (2010). AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function. Journal of Computational Chemistry, 31(2), 455–461.
  34. Uwimbabazi, L., Kayitare, T., & Nsengiyumva, P. (2015). In-vitro antibacterial evaluation of medicinal plant extracts. African Journal of Traditional Complementary and Alternative Medicines, 12(1), 30–40.
  35. Zhang, H., Li, Q., & Chen, J. (2024). Evaluation of antibacterial potential of plant extracts using agar diffusion method. Journal of Applied Microbiology, 136(1), 21–35.

Gastrointestinal infections caused by multidrug-resistant bacteria such as Escherichia coli, Salmonella typhimurium, and Shigella dysenteriae represent a growing public health challenge, highlighting the need for alternative therapeutic agents. This study aimed to evaluate the phytochemical composition, antibacterial potential, and in-silico binding interactions of Garcinia kola ethanol stem bark extract against these pathogens. The objectives were to identify key bioactive compounds, determine antibacterial efficacy, and assess molecular interactions with target bacterial proteins. Phytochemical screening was performed, and thin-layer chromatography was used to profile the chemical constituents. Bacterial isolates were characterized using cultural, biochemical, and 16S rRNA molecular methods. Antibacterial activity was assessed via zone of inhibition, minimum inhibitory concentration (MIC), and minimum bactericidal concentration (MBC) assays, while molecular docking studies evaluated binding affinities of extract compounds against bacterial protein targets. Results revealed the presence of saponins, anthraquinones, phlobatannins, tannins, cardiac glycosides, and phenols, with multiple compounds detected via TLC. The extract exhibited antibacterial activity with inhibition zones of 19.00 ± 1.00 mm to 35.00 ± 0.00 mm at 500 mg/ml, MIC values of 0.07 ± 0.01 to 0.45 ± 0.05 mg/ml, and MBC of 250–500 mg/ml. Molecular docking indicated strong binding of hesperidin, rutin, and ellagic acid (-5.7 to -9.7 kcal/mol) to bacterial proteins. In conclusion, Garcinia kola ethanol stem bark extract exhibits potent antibacterial activity and promising in-silico interactions, supporting its potential as a natural therapeutic agent. It is recommended that further in-vivo studies and formulation development be undertaken to explore clinical applications.

Keywords : Garcinia kola, Ethanol Extract, Gastrointestinal Pathogens, Antibacterial Activity, Phytochemicals, Molecular Docking

Paper Submission Last Date
30 - April - 2026

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